PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004513289.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C3H
Protein Properties Length: 357aa    MW: 40024.5 Da    PI: 7.0444
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004513289.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.92.6e-06326226
                    -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                    k++lC+ffa  G C  G+ C F+H+
  XP_004513289.1  3 KRVLCKFFAH-GACLKGEHCEFSHD 26
                    99****6666.*************5 PP

2zf-CCCH27.55.5e-093454526
                    --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                    +C f+++ G C yG+rC++ H+
  XP_004513289.1 34 ICTFYQK-GVCAYGSRCRYDHV 54
                    7******.*************7 PP

3zf-CCCH18.82.8e-06139160426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     ++C+ fa+ G C++G++C+  Hg
  XP_004513289.1 139 PICS-FAAAGNCPRGEQCPHVHG 160
                     6788.*************98887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.671128IPR000571Zinc finger, CCCH-type
SMARTSM003562.4E-5127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-7326IPR000571Zinc finger, CCCH-type
PfamPF156636.3E-8773No hitNo description
PROSITE profilePS5010314.3892956IPR000571Zinc finger, CCCH-type
SMARTSM003560.00313055IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-53253IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-43453IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112135162IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-4136161IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.52E-13193268No hitNo description
Gene3DG3DSA:3.30.40.104.5E-10197263IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001620.00102203263No hitNo description
PfamPF000972.6E-7204261IPR018957Zinc finger, C3HC4 RING-type
PROSITE profilePS5008912.386204262IPR001841Zinc finger, RING-type
SMARTSM001843.2E-7204261IPR001841Zinc finger, RING-type
PROSITE patternPS005180228237IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.225291320IPR000571Zinc finger, CCCH-type
SMARTSM003560.07291319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MSKRVLCKFF AHGACLKGEH CEFSHDWKAP PNNICTFYQK GVCAYGSRCR YDHVKASRAQ  60
PSTPSSSIIE NQPLVSESVV LGNTRITSND VTTAAEFSLS NTPYVLPSIP AWNQESVHHD  120
FLREDDVVQS IITSPSELPI CSFAAAGNCP RGEQCPHVHG DLCPSCGRHC LHPFRPEERE  180
EHMMSCENKQ KHLEALKRSQ EIECSVCLER VLSKPTAAER KFGLLSECDH PFCISCIRNW  240
RSSNPTLGMD VNSTLRACPI CRKLSYFVVP SVIWYATSDE KLEIIDTYKA KLKSIDCKHF  300
DFGDGNCPFG TSCFYKHAYR DGRLEEVALR HLGAADGDTI IAKDIRLSDF LANMHLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465660.0AC146566.7 Medicago truncatula clone mth2-71p5, complete sequence.
GenBankAC2035450.0AC203545.6 Medicago truncatula clone mth2-60c13, complete sequence.
GenBankCU4685740.0CU468574.5 M.truncatula DNA sequence from clone MTH2-69A16 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004513289.10.0PREDICTED: zinc finger CCCH domain-containing protein 69
SwissprotE0X9N41e-179C3H69_ARATH; Zinc finger CCCH domain-containing protein 69
TrEMBLG7IWL80.0G7IWL8_MEDTR; Makorin RING-zinc-finger protein
STRINGGLYMA15G42750.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102113340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-165C3H family protein